Package: octopucs 0.1.1
octopucs: Statistical Support for Hierarchical Clusters
Generates n hierarchical clustering hypotheses on subsets of classifiers (usually species in community ecology studies). The n clustering hypotheses are combined to generate a generalized cluster, and computes three metrics of support. 1) The average proportion of elements conforming the group in each of the n clusters (integrity). And 2) the contamination, i.e., the average proportion of elements from other groups that enter a focal group. 3) The probability of existence of the group gives the integrity and contamination in a Bayesian approach.
Authors:
octopucs_0.1.1.tar.gz
octopucs_0.1.1.zip(r-4.7)octopucs_0.1.1.zip(r-4.6)octopucs_0.1.1.zip(r-4.5)
octopucs_0.1.1.tgz(r-4.6-any)octopucs_0.1.1.tgz(r-4.5-any)
octopucs_0.1.1.tar.gz(r-4.7-any)octopucs_0.1.1.tar.gz(r-4.6-any)
octopucs_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
octopucs/json (API)
| # Install 'octopucs' in R: |
| install.packages('octopucs', repos = c('https://roger0268.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:977d83f83c. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 128 | ||
| source / vignettes | OK | 169 | ||
| linux-release-x86_64 | OK | 128 | ||
| macos-release-arm64 | OK | 144 | ||
| macos-oldrel-arm64 | OK | 170 | ||
| windows-devel | OK | 88 | ||
| windows-release | OK | 92 | ||
| windows-oldrel | OK | 96 | ||
| wasm-release | OK | 95 |
Exports:compsim2draw.octopucsF1glzclusterglzcluster2glzcsIDsclusterIDscluster2octopucs
Dependencies:cliclustercrayongluehmslatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepkgconfigprettyunitsprogressR6rlangstringistringrvctrsvegan
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Complementarity and disimilarity | compsim2 |
| Draw the Generalized Clustering Hypothesis | draw.octopucs |
| Labeling of memberships of two groups | F1 |
| Generalized Cluster | glzcluster |
| Generalized Cluster | glzcluster2 |
| Support for Groups and Subgroups in the Generalized Dendrogram | glzcs |
| Memberships of Groups and Subgroups | IDscluster |
| Memberships of Groups and Subgroups | IDscluster2 |
| Support for Hierarchical Clusters | octopucs |
